PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000311683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 828aa    MW: 93717 Da    PI: 9.4644
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000311683genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP58.51e-18634703171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                    r+eksL lltq+f+kl+ +s++  +   + +++L   d+  k+RRiYDi+NVL+++nliek     ++k++++w g
  MDP0000311683 634 RREKSLALLTQNFVKLFVCSTKLLT---NFCSKL---DEAAKVRRIYDIANVLSSMNLIEKthtsdTRKPAFKWLG 703
                    689****************877655...568999...7778***********************999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.649178208IPR002885Pentatricopeptide repeat
PfamPF015350.004181203IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-4181203IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.402212246IPR002885Pentatricopeptide repeat
PfamPF015350.01214244IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-4214247IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.014247281IPR002885Pentatricopeptide repeat
PfamPF130411.3E-15249293IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.7E-10250283IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.496282316IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.3E-8284317IPR002885Pentatricopeptide repeat
PfamPF130412.9E-18316365IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.375317351IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.2E-8320353IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.274352386IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.1E-10355388IPR002885Pentatricopeptide repeat
PfamPF130411.5E-13386433IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.542387421IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-7390422IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.659422459IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.38460494IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.10.10.105.1E-20630704IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-21634703IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-9636704IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.7E-15636703IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MPPQGTCAPS TPSLWHVMTE IKRGVFTTRL RVQSLQNARS ATQNCRTEKP KTQFSNSVSE  60
LHHLTFSSLS RLSLGEPDSQ ILPXNPNPDS SQPPNRLDFR FGRQNPEEAL ESWTQSPPVL  120
QNTRPPSELH TLLLLLRPRR RYCRPXARLQ VPLDPRGPNE GPQARPWAED FRYHHGEDLN  180
SFNTILDVLC KAKRVEKAYN LFKVFRGRFK ADCVSYNIIA NGWCLIKRTP KALELLGXMV  240
ERGLDPSLTT FNIMLKGYFR AGQIKEAWEF FLQMKKRKCE IDVVTYTTLV HGFGVVGEIK  300
KARKVFDEMV GEGVLPSVAT YNALIQVLCK KDXVENAVVV FEEMVSKGYV PNVTTYNVLI  360
RGLCHSGNMD RALEFMDRMK GDECEPNVQT YNVVIRYFCD AGEIEKALNV FEKMGCGDCL  420
PNLDTYNVLI SAMFVRKKPE DLLVAGKLLI EMVDRGFLPR RFTFNRVLDG LLLTGNQGFA  480
KEILRLQSKC GRLPRQHISS VVKFVVPYVS QVETXVFSLP FXSNCIAAAS KKLVSRLCES  540
ISSIXISRSL CQVLARKAKN QYSWKGFKAI PNALQELREE GLRENICNFD GNEDPKGYQI  600
SDDEDDAERC GSQQNENSNP TLNXKPMNPK SDNRREKSLA LLTQNFVKLF VCSTKLLTNF  660
CSKLDEAAKV RRIYDIANVL SSMNLIEKTH TSDTRKPAFK WLGLRGKEEV PQETKKRAFG  720
TDITNVSSKR GKVDSFIGGK LDGQKQKGLV GEADRSNLED SKDGSKSYQF GPFAPVTIAR  780
AGTGNTRNVH DWEKLTSTYR PQYQNQGPXD NSGRTRREVD RERNMTGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9g_C3e-6617847615424pentatricopeptide repeat protein dPPR-U8C2
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.115341e-133cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.17e-61DP-E2F-like 1